PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_02960.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB
Protein Properties Length: 286aa    MW: 32069.7 Da    PI: 5.2334
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_02960.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.61.4e-181461148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                             rg+WT+eEd++lv  ++q+G  +W++ ++  g+ R++k+c++rw +yl
  Rsa1.0_02960.1_g00001.1 14 RGPWTPEEDQILVSFIHQHGHSNWRALPKQAGLLRCGKSCRLRWMNYL 61
                             89******************************99************97 PP

2Myb_DNA-binding52.21.4e-1667112148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                              rg++T+eE++ ++ +++ lG++ W++Ia++++ gRt++++k+ w+++l
  Rsa1.0_02960.1_g00001.1  67 RGNFTQEEEDAIISLHQILGNR-WSAIAAKLP-GRTDNEIKNVWHTHL 112
                              89********************.*********.************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.329961IPR017930Myb domain
SuperFamilySSF466891.39E-3011108IPR009057Homeodomain-like
SMARTSM007171.9E-141363IPR001005SANT/Myb domain
PfamPF002497.1E-171461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-251568IPR009057Homeodomain-like
CDDcd001671.32E-111661No hitNo description
PROSITE profilePS5129425.54662116IPR017930Myb domain
SMARTSM007179.7E-1566114IPR001005SANT/Myb domain
PfamPF002496.2E-1567112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.6E-2769116IPR009057Homeodomain-like
CDDcd001671.24E-1069112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MGRAPCCEKM GLNRGPWTPE EDQILVSFIH QHGHSNWRAL PKQAGLLRCG KSCRLRWMNY  60
LKPDIKRGNF TQEEEDAIIS LHQILGNRWS AIAAKLPGRT DNEIKNVWHT HLKKKLEDYQ  120
PAKPKASNKK KGTKTKPQSV PAKLNSTRSE AGLANSSTPS FESLFSASPS SSDEVSSVTF  180
LSHEGHINEA KMDSKSGEMI TTIDHDSLSF INFGEDIDES FWNETLYSQD EENNASNPEV  240
AGFDEMQQDF QQFGSVGNEM VFDSEMDFWL DVLARTGGEQ DLLSGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-28121175109B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF7382800.0KF738280.1 Brassica napus MYB transcription factor 15 (MYB15.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013626405.11e-179PREDICTED: myb-related protein Myb4-like
SwissprotQ7XBH46e-77MYB4_ORYSJ; Myb-related protein Myb4
TrEMBLA0A0D3BCW81e-179A0A0D3BCW8_BRAOL; Uncharacterized protein
STRINGBra001907.1-P1e-178(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.11e-139myb domain protein 15